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1. Smalheiser NR, Zhou W, Torvik VI: Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results. J Biomed Discov Collab; 2008 Feb 15;3:2
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results.
  • BACKGROUND: PubMed is designed to provide rapid, comprehensive retrieval of papers that discuss a given topic.
  • However, because PubMed does not organize the search output further, it is difficult for users to grasp an overview of the retrieved literature according to non-topical dimensions, to drill-down to find individual articles relevant to a particular individual's need, or to browse the collection.
  • RESULTS: In this paper, we present Anne O'Tate, a web-based tool that processes articles retrieved from PubMed and displays multiple aspects of the articles to the user, according to pre-defined categories such as the "most important" words found in titles or abstracts; topics; journals; authors; publication years; and affiliations.
  • Clicking on a given item opens a new window that displays all papers that contain that item.
  • One can navigate by drilling down through the categories progressively, e.g., one can first restrict the articles according to author name and then restrict that subset by affiliation.
  • Alternatively, one can expand small sets of articles to display the most closely related articles.
  • We also implemented a novel cluster-by-topic method that generates a concise set of topics covering most of the retrieved articles.
  • CONCLUSION: Anne O'Tate is an integrated, generic tool for summarization, drill-down and browsing of PubMed search results that accommodates a wide range of biomedical users and needs.
  • It can be accessed at 4.
  • Peer review and editorial matters for this article were handled by Aaron Cohen.

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  • (PMID = 18279519.001).
  • [ISSN] 1747-5333
  • [Journal-full-title] Journal of biomedical discovery and collaboration
  • [ISO-abbreviation] J Biomed Discov Collab
  • [Language] ENG
  • [Grant] United States / NLM NIH HHS / LM / R01 LM007292; United States / NLM NIH HHS / LM / R21 LM008364
  • [Publication-type] Journal Article
  • [Publication-country] United States
  • [Other-IDs] NLM/ PMC2276193
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